NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FI_contig03874

Scaffold FI_contig03874


Overview

Basic Information
Taxon OID2166559006 Open in IMG/M
Scaffold IDFI_contig03874 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1658
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024896Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
FI_00818680F024896N/AGVALAKGKPPTAGTHTNQGKAKVMYVLKGMVYAYVPATTSTPGSITIDVKSSNRHGKLLNGQNAVIITVGLNTKIELRNGVTLATIALGQPGDLGTVKVRAPRLTFKSAILSDVEAALQNHAAHMVTDWGPPTS

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