Scaffold JCVI_READ_1121316

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JCVI_READ_1121316

Scaffold JCVI_READ_1121316

Overview

Basic Information
Taxon OID	2166559018 Open in IMG/M
Scaffold ID	JCVI_READ_1121316 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean6 (GOS4441574)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1000
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004748	Metagenome / Metatranscriptome	425	Y

Sequences

Protein ID	Family	RBS	Sequence
Ocean6-_00464090	F004748	GGAG	MFIERLKTLRLYERQSKLGIYHTFKRKNTVYVFKCDSCGVTFLRKRANVDPVRATNDYKHVCSYCDTKKFAQQVGVKMRHIYKMDASSTTITL

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