NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F0B48LX02HV2UU

Scaffold F0B48LX02HV2UU


Overview

Basic Information
Taxon OID2170459002 Open in IMG/M
Scaffold IDF0B48LX02HV2UU Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006669Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
E1_08788570F006669GGAGGMEAWPITQSAGVPRSPQVEMREMWTYSDGALTVKGYWRPGGTAGAGSWVLVDQGTGNVQGVVPAGEFSCRFRPMDVFADVPALPGYLGTVTAPDGAAL
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Institute for Fundamental Biomedical Research
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