NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FZY7DQ102IS1QV

Scaffold FZY7DQ102IS1QV


Overview

Basic Information
Taxon OID2170459002 Open in IMG/M
Scaffold IDFZY7DQ102IS1QV Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080282Metagenome / Metatranscriptome115Y
F083077Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
E1_00414740F080282N/ALGAMYISYGLGVAFIVVFGAALWVLTHWRVDKVAIWAVLLFLPFAPMLTFLSRVLWIYLDQKFDPERF
E1_00414750F083077N/AMHAKDLTTTVERLTSVIGPKLARERASLHITVKPALDAVDLQPSLCFPEREAA

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