NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FZN2CUW02IRHJY

Scaffold FZN2CUW02IRHJY


Overview

Basic Information
Taxon OID2170459003 Open in IMG/M
Scaffold IDFZN2CUW02IRHJY Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000307Metagenome / Metatranscriptome1330Y
F071610Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
E4A_05021290F071610N/ATPNQHKLAFIFATVLAVAALLAITTWAAVPKRPSDSAAAPTGTIYRPDLWKVY
E4A_05021300F000307N/AVADLNVVDRIVKAAAVPVGMSWMWTLAYGYHEDRTPTHGYAATREAATTAFAKSWRRE

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