NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBPF9FW01DG0PX

Scaffold GBPF9FW01DG0PX


Overview

Basic Information
Taxon OID2170459006 Open in IMG/M
Scaffold IDGBPF9FW01DG0PX Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066004Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
L01_04557100F066004N/ANIEHGRLGISVKAQITPMSRAISKSTWDQIKIARAAGASYGELAERTGINKGTLLAHARRHGWTRDIALARPKGDAPNVTDAIAGILHERGRETKMKMSEFLLKAARQLAERDDIVVDSLEGAKILEALRTSLYPQPVMVDHRSLNVSVSGGLSEEALARIEAMTK
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