NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GJE5RH003F5JAU

Scaffold GJE5RH003F5JAU


Overview

Basic Information
Taxon OID2170459007 Open in IMG/M
Scaffold IDGJE5RH003F5JAU Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m).1 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041372Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
L02_07547450F041372GGAVRAAGVSDEALVDAIHIAALFNMIVRLADSLGWDVPPYEAMLANAEGMLARGYELVSLPLPAHG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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