Scaffold G1P06HT01AH00W

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold G1P06HT01AH00W

Scaffold G1P06HT01AH00W

Overview

Basic Information
Taxon OID	2170459018 Open in IMG/M
Scaffold ID	G1P06HT01AH00W Open in IMG/M
Source Dataset Name	Litter degradation MG2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	604
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter → Switchgrass, Maize And Mischanthus Litter Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location
Location Name	University of Illinois Energy Farm
Coordinates	Lat. (^o)	40.1097	Long. (^o)	-88.2041	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008460	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
2MG_01793390	F008460	N/A	ETRAMVTDDDGDDLVPFQDVRVIRSTPPALFCRIGQKSVWLPRSHISGKLWCTGDRGKLFIRRWVARDRNLIEAADAAICPPVQPLSRLSTALHVVRRHRDASHAQ

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