NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold G1P06HT01DPJ8E

Scaffold G1P06HT01DPJ8E


Overview

Basic Information
Taxon OID2170459018 Open in IMG/M
Scaffold IDG1P06HT01DPJ8E Open in IMG/M
Source Dataset NameLitter degradation MG2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)728
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter → Switchgrass, Maize And Mischanthus Litter Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location
Location NameUniversity of Illinois Energy Farm
CoordinatesLat. (o)40.1097Long. (o)-88.2041Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007634Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
2MG_00392090F007634N/AYVVPCEFGEPDGDAGLGARSMPDWRRARSPWQRGQRDEGHQQTQRRLHYDALEECVDPRRRSGGARGKGQHAYAQRSAMSLIVATQHRDVVKLPRDDRRFEVLTCGRKMTPAERVEIRDWMADPKNIGALHRALLAAPAVPLDVFDPFDNPPPFAGRLEMIGMGETRLEDAYGAAVEALEGFPLFTMTQAQRLIGYFGEYKTGDWTNMARHTVAKNAYRLRARSEPNNRIEYLKRKEIIYAC
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