NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZEQPF101DGDUK

Scaffold GZEQPF101DGDUK


Overview

Basic Information
Taxon OID2170459022 Open in IMG/M
Scaffold IDGZEQPF101DGDUK Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)503
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameUnited Kingdom: Rothamsted, Harpenden
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004534Metagenome / Metatranscriptome434Y

Sequences

Protein IDFamilyRBSSequence
FA2_00546060F004534GGAGGMKKVFLLIVIPALLVAMGFAQTPAASGNTDQINVKGCLSGSDGNYTVAEDNTGKIFKITTSSADLKAYVGQELSLTGQKAGTAENSLAVTE
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