NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZRSKLJ02FND90

Scaffold GZRSKLJ02FND90


Overview

Basic Information
Taxon OID2170459024 Open in IMG/M
Scaffold IDGZRSKLJ02FND90 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089478Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
FD1_07184060F089478GGAMKKMPKLLVCLLVLAQCSVLEGQSASHLNGLRMRVATQAGQEFFYAGPYTVAECQVQTAFLRAVLQKYDAEKLGKWTWVLIRSDDWIQLVSQLHLDPASPAFSHLEHRQTFFDEALLVHKPKRELELATKWNIPFGNLLDFAVSHELGHA
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