NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GZR05M101COX5P

Scaffold GZR05M101COX5P


Overview

Basic Information
Taxon OID2189573001 Open in IMG/M
Scaffold IDGZR05M101COX5P Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031176Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
FD2_01043020F031176N/AGLEATGDEGAGACFPLARGALVAGLVPGQLLGWSWPDRLRHALALAAGGAGSWTTAPDGAEERDRVDLAAYERLLDAVRVDPPA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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