Scaffold 2199731431

Basic Information
Taxon OID	2199352003 Open in IMG/M
Scaffold ID	2199731431 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2199352003 Open in IMG/M

Scaffold ID

2199731431 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20680
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (22.73%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

20680

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (22.73%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, WI

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F034061	Metagenome	175	N
F061497	Metagenome	131	Y
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
2199883082	F065768	GAG	MSVCSPCYDAGSYVNACLTEFTFGIVEADTEFTVWLQHNATQKIMQFTATSDAEGYITIEGIQLDPLQGYTIWVTIDGVEQDITVDGDIYKCLSFSAASVGQSPVVIP
2199883084	F025680	N/A	MKYIKELKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLKDSLFRLSSHRESGRRKQETT
2199883090	F070850	GGAG	MTKELSQTTQSITPSTGVVLLAFGKPQYYWAAYNLAFSIRKHSPNVNITVLFDNPIKGISHCQDFMQYINNIGSIDADDIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELSQSGKNYISHCVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNNPIPIKELRMKWGGGQPDELYMNVALAIHGIDPALKTYSRNDGSEGGMIHFSMQRGLSFEKITENYYLQSYYGGAGFTPIFYINWLDRMLNADFKAIGKRHIYLISRISQNKYADGKR
2199883094	F008936	N/A	MASFDELVKQKIKLLETVPEEIATAAERTQRQAWRKLAPLLSEMDVDAQGNITQTEDNVRRIGLITEELNKVLAGGEYRAAVQSFLASIDEGVQLTDDIARKIDSTFEPDNVQRQLLAISKQNAINAFFGSGLRENVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIEYFQYLGGEIPTTRPFCEHREGAVFHRKEIEAWGNGENSAGINDIRNGTWAGRIEGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAKAEGYA
2199883098	F034061	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDTMVGAGKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMAVPVEIFVYDMTTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
2199883099	F024717	N/A	MATPKEISDRINALFSDWNSGFTPLSFAVQDMRREMYIRIFGIDTGRGRNQAGNFLPTKPYTPAYAKIKAANGKPPLELTGFLKRSFATDQTTVVTEGFDTAIYTVADEAGKVEGLEKLYGTIFKPTAEEQSRMLQLHADLLVEQIANQISKP
2199883101	F061497	N/A	MIDITLEGGYVTFYTSVLGVIASNVELCEVVDENTLHLGTNVGTFLINVNQFTFNGIKFTDSTKAVNYILNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters