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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 2199352004 Open in IMG/M |
| Scaffold ID | 2199797285 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8202 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (86.36%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 13 (100.00%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000714 | Metagenome / Metatranscriptome | 924 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F001460 | Metagenome / Metatranscriptome | 690 | Y |
| F002387 | Metagenome / Metatranscriptome | 565 | Y |
| F007468 | Metagenome / Metatranscriptome | 350 | Y |
| F017829 | Metagenome / Metatranscriptome | 238 | Y |
| F022414 | Metagenome / Metatranscriptome | 214 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2199962000 | F017829 | AGG | MANRYRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQLLSKATRIEFGS |
| 2199962003 | F000714 | GAGG | METTETSAVTIPDTYNPNLLVTYKVIRGYSDAEYATDKVSSIEWDLHNSRTNSKTIHVLNSKIDTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYSYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA |
| 2199962004 | F000311 | GGA | MYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLSESYWSDREATGYKEK |
| 2199962005 | F001043 | AGGAG | MSDYKDGFEDGYKFAREEMMEKLAEIDIADIDSWILDRLSEMIEGGTL |
| 2199962007 | F001125 | GGCGG | MGDRANFGFKDSKGDVLYLYGHWAGHRMLENLANAVEQARPRWSDHSYATRICISQLINEEWPSETGWGLYINQLGDNEHKVPVINWAAKTFTLMEEDLQAEVFSQSLDAFVSKYSSQPSMV |
| 2199962009 | F002387 | AGGAGG | MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIYGEFNKFYNLKEGDEDYLC |
| 2199962010 | F001460 | GAGG | MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDYTN |
| 2199962011 | F007468 | GGAGG | LTTQTKSSKFIEYMKIHLISLNQDLDKDLNVQSKINIQGQIMATEHLLSVATDIMNDNLQGKGY |
| 2199962012 | F000263 | GGA | MNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQELSDAIEQEERSEEAMDSMVRTECEGRLDTLTELYKLTYDLSFAIGIRTENRKDGHI |
| 2199962013 | F001019 | AGGA | MSYEPTLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR |
| 2199962015 | F000441 | AGAAG | MKMSDQYINDQLSKAQALLWSGSLHEVDEAHNIVSNLIRDRLEQVSN |
| 2199962016 | F000852 | AGGA | MTTKREYLKTQGITVGVRGRFSGAAKVAIQEAINKGITFSDPQPATNKAK |
| 2199962017 | F022414 | AGGCGG | MSKTQEIKVAEALVNLTDDHWFNPTIFGRYLADQPVYTVDRIVEMLVSVISELDKVYELLKVRGTSSEGLLLANELNECIKAYQEVNVISNLKLPKPTTYNIKREVKVEPRVFGYTDEDKNPFDQV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |