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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 2199352004 Open in IMG/M |
| Scaffold ID | 2199802834 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7310 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (23.53%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013634 | Metagenome / Metatranscriptome | 269 | Y |
| F025485 | Metagenome / Metatranscriptome | 201 | Y |
| F031456 | Metagenome / Metatranscriptome | 182 | Y |
| F051709 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2199970298 | F051709 | N/A | MIPNKERLGIEVAIRPHIKTIDVINSELQKVNGSIERKWRQLDDFSASWSYTIWSNWKDAMQGELSYREYLIIVLEAYKK |
| 2199970300 | F031456 | N/A | MALIGSFPASGSAVFNLDFLPEKVLLVNTGNPDTTLSNFSVVTSGVQLMSITAVARISALAQFDSGAVLDNTVPVASSYLRLASGRINKATTITGTNSIAFTRDFYAASTNISNVARRAVEQSINPSANATFDNFEALIFDSTNILRAQITFANGFTDEYTVPEINALYANYHVADGGGQLSGLSVIDADSGAGLISQVVLFNSSGGSTVVLKTDYVQL |
| 2199970310 | F013634 | N/A | MPIQLAPLVGAGLGALQQSKIDKALAGEKTYTKPKTIFGKLIGGVSGRTAAAEASASTKTAPLNEKVMNSLQPSAKSTPITGGFSFGGEATKRTYLPFYLGAVVLGIFFFMRRKGGRRRR |
| 2199970312 | F025485 | N/A | MENARKYLPLIVGSLVAIALFFVSRKMRKSEQANTERSTILEKAREAKLAKSILRKSEEEDDTQSIAI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |