NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold 2199869481

Scaffold 2199869481


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199869481 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17874
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026273Metagenome / Metatranscriptome198Y
F068846Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
2200054465F068846N/AMKKFSKLILESKDEARTMSPLTNPVDWDEIFKPLIEHIENNLQSKVQGPGSAVFTSKTKALLDEFIDQVEEDYKDYFQYEIHDGSQESFLQAFNINVDYRDIMDCIQPLLDRTDDVEDSGNFDFGAFVIDIVSIKYNTNEEIAEDLADVHGKLKMLDADFTIQVKKSRGPRETATISLTKTSTDVDTLFLNGLSEGEKISNVIIYVYNKETVQAMDLD
2200054476F026273N/AMEEEEVSFADDKMYLKVLIFQKIQQAIDKKKDIYYIPDFENEFSIEKLLNLKKILGENNFNVLIFYNEFRKNPEIIDDVFSNLSKFSNSQIIRDY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.