NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2199895062

Scaffold 2199895062


Overview

Basic Information
Taxon OID2199352004 Open in IMG/M
Scaffold ID2199895062 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029747Metagenome / Metatranscriptome187Y
F038235Metagenome166N
F039047Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
2200073969F039047N/AMKMKIEVDINDLVALKVALTNSGRRIDELMNDKPDWRCLYEFDKNSVEKAQKVLSKMIAN
2200073970F029747AGGMKYTLMLDTDTCTSFSTYPHTREGLDKALDRVDKVRSKDGFKCANIVSDRDGEVFVLDMSLAIN
2200073971F038235N/AMIREILAPFERVTYVREDGNQAVYKVFRPTKHLFVNKKKDNGAVVGFRAWKMPDSGADERMGWRSFRFDRIASRKLTFV
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