Basic Information | |
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Taxon OID | 2199352005 Open in IMG/M |
Scaffold ID | 2200039176 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 597 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, WI | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000808 | Metagenome / Metatranscriptome | 882 | Y |
Protein ID | Family | RBS | Sequence |
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2200253389 | F000808 | AGGAG | MEYTYSLTTSYDGKLVNTLRVSDLLEAVHTWNNCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK |
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