Scaffold QLA_contig01449.1449

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold QLA_contig01449.1449

Scaffold QLA_contig01449.1449

Overview

Basic Information
Taxon OID	2199352018 Open in IMG/M
Scaffold ID	QLA_contig01449.1449 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2839
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Source Dataset Sampling Location
Location Name	Qinghai Lake, Tibetan Plateau
Coordinates	Lat. (^o)	36.381	Long. (^o)	100.218	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007248	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
QLA_00490000	F007248	AGGAGG	MANTTFTGPVTALNGFIGGANTNPHTGSADTQQGGNVAWTVSNASTVTIASGTRSGETLSAVNNDAVLIYVADGFSNAAAYAFSDGTTWKRVQDGADISTTA

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