Basic Information | |
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Taxon OID | 2199352018 Open in IMG/M |
Scaffold ID | QLA_contig01691.1691 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Illinois, Urbana-Champaign |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2615 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake |
Source Dataset Sampling Location | ||||||||
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Location Name | Qinghai Lake, Tibetan Plateau | |||||||
Coordinates | Lat. (o) | 36.381 | Long. (o) | 100.218 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011474 | Metagenome / Metatranscriptome | 290 | N |
F025017 | Metagenome / Metatranscriptome | 203 | N |
F048168 | Metagenome / Metatranscriptome | 148 | Y |
F051646 | Metagenome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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QLA_00550060 | F011474 | N/A | MKNRIDHLTHFDIVVKEELASCTSADEMLTVLAKNYDLRKPIGGITKAAFTIGLRTAVGMLKPDVSANFSYKAKELTDTRFPHLKIFR |
QLA_00550090 | F051646 | N/A | MVGLFYIHLPMSFSIPQQIEKDIIAGRAQYRTFQTGNGGQSILQVPTNSYAVIYGYDFSPAGGGLKFSSTIQSAAATLNRAVLNASVIRFFETQQISFYTGTDFYPFIHHIDVKTTASTSIIQNTLPAVGATNVVLQLEAIEEINNTPITRQVYITSSKDVTITHGLIQNAIPATNGFIPVTSRTPGFLTYGGSPQLVQAQTNYGPAGTPQQFMQPSPKDFQDFGLGLLPINPNDQAFATPDATNGLLEANVALNALGLPFVETAATNYYLCLHYALYTEAVPEQRG |
QLA_00550100 | F048168 | N/A | LVNATQLQVTLTINNDVVIDQVVACDLGAKETSGVTSGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNVTVYYKNEI |
QLA_00550110 | F025017 | N/A | MANSMNMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLILAAPPARPRPYW |
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