NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold QLA_contig07104.7104

Scaffold QLA_contig07104.7104


Overview

Basic Information
Taxon OID2199352018 Open in IMG/M
Scaffold IDQLA_contig07104.7104 Open in IMG/M
Source Dataset NameSaline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1256
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Water Microbial Communities From A Tibetan Plateau Lake

Source Dataset Sampling Location
Location NameQinghai Lake, Tibetan Plateau
CoordinatesLat. (o)36.381Long. (o)100.218Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y

Sequences

Protein IDFamilyRBSSequence
QLA_00285700F000325GGAGMKTAEGNDKLGKGCVVVSRPVGDTCPSTCAFLGNGCYAEATERQYKNVRPASMQNVITEVARIRSMIIDAIKRGKSIRWHERGDWFLDGKLDEDYVNNVSIACESVIKSGYTLPDMWFYTHIYDSRLVSLEKYMAVYASIHNAEDMATAKRVGFKLFAWCDSDEAIVSKRPRGKVXXAAWQAALPKLVVMEGETFVTCPEIRKGRDFVTCTGNKDSIACNMCVRGKKNVLFLLIEVNNET
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