Scaffold deeps_contig25156.16265

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold deeps_contig25156.16265

Scaffold deeps_contig25156.16265

Overview

Basic Information
Taxon OID	2199352024 Open in IMG/M
Scaffold ID	deeps_contig25156.16265 Open in IMG/M
Source Dataset Name	Bare-fallow DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2968
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069401	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
deeps_02998740	F069401	N/A	MLDVPDGLRHRRLFVGRQLAGVVAIVTSVWLNGSFAQRPPSPAVGPDGFLSLQQKISVQELEGLRATAVDPSSTEAAFDLDVRNNMLIVKIANAEVARGFLSESDTARESCYGFERDDGRLKEGYSLCQARVDLVVTARPKAKDGYFASLKAGALYFKFTLLDRTHGANESVYSAAMLRPRK

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