Scaffold deeps_contig25565.16505

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold deeps_contig25565.16505

Scaffold deeps_contig25565.16505

Overview

Basic Information
Taxon OID	2199352024 Open in IMG/M
Scaffold ID	deeps_contig25565.16505 Open in IMG/M
Source Dataset Name	Bare-fallow DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1071
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081404	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
deeps_03047200	F081404	N/A	MPASRNRKTVIASGLLCAALTLVVMFTTPAAFRSPAAVVVMASIGTVAVLVQLRLRRDDSSRAVRPALWLNVLGILFALAALFPAPFHIGPQVVEAMVFGAVGSFALSSAIILHSLRKPAAKTE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.