Scaffold deeps_contig26331.16971

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold deeps_contig26331.16971

Scaffold deeps_contig26331.16971

Overview

Basic Information
Taxon OID	2199352024 Open in IMG/M
Scaffold ID	deeps_contig26331.16971 Open in IMG/M
Source Dataset Name	Bare-fallow DEEP SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Argonne National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5413
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location Name	United Kingdom Rothamsted
Coordinates	Lat. (^o)	56.03	Long. (^o)	-2.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F003157	Metagenome / Metatranscriptome	504	Y
F008431	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
deeps_03137010	F003157	AGGAGG	MFDPDANQKRENTDLWGFARFGGLDRLDWLMILISVLLGTIAKQHHVLDLPDWFLEWVSPFLLMAFGYKARRKITEVVESRRDRGKDTREE
deeps_03137030	F008431	GGAG	LGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS
deeps_03137040	F001528	AGGAG	MSEKNQIVVVLIVALFLGAFVDRITALKIVAGVVLLWTLQNQPVVFECIRKLFSFVQRRPSVREYRGGVTTFRAS

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