NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold deeps_contig69794.42397

Scaffold deeps_contig69794.42397


Overview

Basic Information
Taxon OID2199352024 Open in IMG/M
Scaffold IDdeeps_contig69794.42397 Open in IMG/M
Source Dataset NameBare-fallow DEEP SOIL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location
Location NameUnited Kingdom Rothamsted
CoordinatesLat. (o)56.03Long. (o)-2.82Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036287Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
deeps_00458210F036287N/ALLSQALFCDDWSMTMKSLMMQLVLFALGLFMIGLNVGQAQITNQLNFKMSQPFTVANTTFEAGSYVIRPVEGTNSMVLEIVSASGHPGVMVDAFSAQPDSSQSGSHLVFNKYANVLALSEVFPRGGNVGYQLAQGHPEEVAAKAEKPTKQIEPLGAE
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