Basic Information | |
---|---|
Taxon OID | 2199352025 Open in IMG/M |
Scaffold ID | deepsgr__Contig_80153 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Argonne National Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1047 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | United Kingdom Rothamsted | |||||||
Coordinates | Lat. (o) | 56.03 | Long. (o) | -2.82 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001384 | Metagenome / Metatranscriptome | 709 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
deepsgr_01144970 | F001384 | AGGAGG | MAEDIRGVGKKITYSEDNPISAEIEALRKSRDNIKRPPKDDEERERLARWLAHRGRDELEVTVGTACYAMAHFEMDSEWRYHLAEHAGTEAGHGWGYIRQANAIDPSRDHSKPDPEFERKYGLTPRIEHHQIMKRDFLSYIFSGNLWPYGHVTAASIQSIQITTPKLLDFEERVVHAEERSHHDAILQKLHDYVWEQIEIWGEAPIRRRIGEIETQALNSRPRTVFDPPRREFLRKYFNVPVENVRKFPAWREYLYLNVLGFPPEPVYIENWPAEIPQPKAGS |
⦗Top⦘ |