Scaffold 2215033008

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold 2215033008

Scaffold 2215033008

Overview

Basic Information
Taxon OID	2209111007 Open in IMG/M
Scaffold ID	2215033008 Open in IMG/M
Source Dataset Name	Cave microbial community (Dry rock wall)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Arizona Genomics Institute
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	524
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090200	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
2214109347	F090200	GGGGG	MEARVTSQSQPFRLIERMEEAKIFHGQEVRADLPTVRVTALAGGRGGQALFCNMGPIRVREILNRGDDRPLSANITLEGLEVPISGTYDLLD

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