NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_c1011605

Scaffold draft_c1011605


Overview

Basic Information
Taxon OID2209111016 Open in IMG/M
Scaffold IDdraft_c1011605 Open in IMG/M
Source Dataset NameThermophilic bioreactor microbial communities at WVSU, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWest Virginia State University
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → butyrate-producing bacterium SS3/4(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Solid Waste From Bioreactor → Microbial Communities From Bioreactor At West Virginia State University,Usa And At Bielefeld, Germany

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022612Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
draft_10116051F022612AGGAGGVRKDLAYSGQYKRVRKDIARKLFKEGRIIYLTPSNIAANDSSPWIKPYAINNRSGEDFDSLVNRYENYNCNYELGYYTNFWIN
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