NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2221120763

Scaffold 2221120763


Overview

Basic Information
Taxon OID2209111019 Open in IMG/M
Scaffold ID2221120763 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FP1 and FP2 (Mercury 0.2g/kg) assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)793
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020400Metagenome224Y
F049764Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
2221856175F020400AGGMTRLTLASLVLTISILPLYAQSSSLHTDRSGYTTGIDGNRTVNTYTDQYGN
2221856176F049764N/AMKGFGKIALVFSLVGGLMAYFIIPVQFSRKRALSPADKAEYALTVNYYQRHCGPVLPEIEERAKAYARESGEDIWAGYDAMLQNRGLVIGSQAWCRYIRALWFK

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