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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 2222084011 Open in IMG/M |
| Scaffold ID | 2225760605 Open in IMG/M |
| Source Dataset Name | Coastal lagoon microbial communities from Albufera, Spain - Sample 1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University Miguel Hernandez |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15620 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (24.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: La Albufera de Valencia | |||||||
| Coordinates | Lat. (o) | 39.330917 | Long. (o) | -0.343 | Alt. (m) | Depth (m) | .3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001345 | Metagenome / Metatranscriptome | 718 | N |
| F004837 | Metagenome / Metatranscriptome | 421 | Y |
| F012449 | Metagenome / Metatranscriptome | 280 | Y |
| F018160 | Metagenome / Metatranscriptome | 236 | N |
| F021095 | Metagenome | 220 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| 2225173893 | F021095 | N/A | MSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQRVVETLIAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSLDTYFRFGNTFTLVRPLTTPTDFTVYQGGSNFLAINGTKYVAAGFDSWLASARVAYKSVNYDFAVTPNLSGTTDFNIQRFACGPGQLSGSIPAFSGAVEGDFYTVRFVSNASSQSPATTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWVGTRWNPCGSGGQCQPVSICNQTQ |
| 2225173895 | F018160 | N/A | MCLKFDAIFAMKAVEFLNYALLIHDILEAERQEAERMRRK |
| 2225173906 | F004837 | N/A | MTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALTYIYQEADQFAQDNQQTVTHALNQSPQR |
| 2225173907 | F012449 | AGG | MDTLIFPLLISSLTALAIAEYHVLPQWWYKTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQITNR |
| 2225173908 | F001345 | N/A | MASAETVILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIHEQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQSEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQNHGHADISPAD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |