Scaffold 2225761436

Basic Information
Taxon OID	2222084011 Open in IMG/M
Scaffold ID	2225761436 Open in IMG/M
Source Dataset Name	Coastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University Miguel Hernandez
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2222084011 Open in IMG/M

Scaffold ID

2225761436 Open in IMG/M

Source Dataset Name

Coastal lagoon microbial communities from Albufera, Spain - Sample 1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University Miguel Hernandez

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15831
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15831

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (20.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location Name	Spain: La Albufera de Valencia
Coordinates	Lat. (^o)	39.330917	Long. (^o)	-0.343	Alt. (m)	Depth (m)	.3
Location on Map

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Source Dataset Sampling Location

Location Name

Spain: La Albufera de Valencia

Coordinates

Lat. (^o)

39.330917

Long. (^o)

-0.343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F002356	Metagenome / Metatranscriptome	567	N
F006105	Metagenome / Metatranscriptome	381	Y
F015569	Metagenome / Metatranscriptome	253	Y
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Family

Sequences

Protein ID	Family	RBS	Sequence
2225176085	F015569	AGG	MLRVSVNLVLSQGNGNQVKIYIAKNGTIIAQSLADLTLSHNNGHAVFTETVLQGAANDEFAIYINAVNDGGSIAISALTFTAHTL
2225176086	F006105	GGA	MIYLSPNTTNTIVVTWTQRASTGDRYILRLTNIAKNSTTDFTLLKSANLSQYTERYDKFQITVGSLETGSYKYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGATDEGVFDQTFDPSFA
2225176090	F002356	N/A	MNLKSAIETLRTELRKFTTQKQAFADYKLADGTVIRVDGDLVAGTPVYVIADDTTLPAPDGEHTVEGVGVVKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPMVDPLMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKASAQQNFNALAEAIQSLKNPK
2225176093	F020667	N/A	MSVTLIAYPTTSFVNDLAAWNNFNTRADADGADAVEPECFDCLYSRFAPLNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPNSGHVSGTWTASGAASSGYVYGVVDAAGFTDILAQNGGGWFQAPWWKLGPSIYVKKMVDLIFTEAGFRYSSTFFNSAFFNKLVMPYAAGTMPVNLSGSNILAQSTGNTGVFSELVEEKVLFSKDTPAPFYDNPGYWVASSSTFVAPSIDTRWNVRVSFTLSGSVASTNNNICRMAIRNPAQNTNFATAINFSLKKNVVSVIDFNNVTIPAFSTANIQFLVEWDGIGGFTQNFTILSGATIQWTCLENPSSIGTLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSVVDWSQKSDENAEQNLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTIKALQTGYRLAQYNLIEGQTEWAYQYGVSSTVSGNVALSVGILKMPFVSHIDNPYSPNVDLTFGQPRLVYYNAVNASGNPFAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFVATTTTPIASDPEFLFNGPIDPDPVDPGYEXPVNPELPSEG
2225176094	F021095	N/A	MSISVXSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQRVVETLIAPTAPSLTQTGFVEHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELADWSLNPYFRIGSSFTNVRPLTTPQAFTVYQGGSNFLAINGTKYETVVPTADWLVSARVAYKGVNYDFAVSPSLSGTTDFNIQRFACGPANLSGSIPALSGAVEGDSYTVRFISNAAGQSDTTTFTFGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
2225176097	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDISLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGWFPEKYDGASHQERAELLKAHAKIGDVWGVVSFFCKFRKLLESFERLFSSPDQGMQGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters