NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2225761940

Scaffold 2225761940


Overview

Basic Information
Taxon OID2222084011 Open in IMG/M
Scaffold ID2225761940 Open in IMG/M
Source Dataset NameCoastal lagoon microbial communities from Albufera, Spain - Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity Miguel Hernandez
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6625
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Coastal Lagoon → Coastal Lagoon Microbial Communities From Mar Menor And Albufera, Spain

Source Dataset Sampling Location
Location NameSpain: La Albufera de Valencia
CoordinatesLat. (o)39.330917Long. (o)-0.343Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002356Metagenome / Metatranscriptome567N
F006982Metagenome / Metatranscriptome360Y
F054681Metagenome139N

Sequences

Protein IDFamilyRBSSequence
2225178213F002356N/AMNLKSAIETLRTELRKFTTQKQSFADYKLADGTVIRVDGDLVAGTPVYVIADDTTLPAPDGEHTVEGVGVVKTEGGKITEIVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPMVDPLMVEEIVKKHLVSIMEELKAAYTELGTMKEKMAAFASQMETMTDIVRKGC
2225178217F054681AGGVIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNSTTDFTLLKSANLSQYTNRYDKFSLAVGVG
2225178218F006982N/AMTNFRLPWGSVETGSYKYEVYDTSSTVAAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGATDEGVFDQTFDPSFA
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