NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICCgaii200_c0938186

Scaffold ICCgaii200_c0938186


Overview

Basic Information
Taxon OID2228664021 Open in IMG/M
Scaffold IDICCgaii200_c0938186 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1324
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009154Metagenome / Metatranscriptome322Y
F017139Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
ICCgaii200_09381861F009154N/AEHRFEDDPIVAVRQNFVACDVLSQLQRVMENPRFLLGGECEPLRAGDQVRVYARRGPYFCIYPHDRMSPCKWTHEKALSK
ICCgaii200_09381862F017139GAGGMPRFARISLIAFAAIATSCSSERPQKEAESKEIGRQLTASYYSCVRTSFASQLPTMVDRNMAMDQAFMVCQTEEAKLQAFENTLTGNPNVGSAAMSVHRNKLKEELSRR

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