NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPgaii200_c0998530

Scaffold INPgaii200_c0998530


Overview

Basic Information
Taxon OID2228664022 Open in IMG/M
Scaffold IDINPgaii200_c0998530 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2517
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037853Metagenome / Metatranscriptome167Y
F049049Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
INPgaii200_09985306F037853GGAGGMRALIAAQVASGLVAGLSLGPKSLDAEVAAIAETAVRIAKAIHDASVKSVQVR
INPgaii200_09985307F049049N/AEERGTQRLRWIAAVVSAALDSRTMARGKKPPSWSPVAIERDGRAYSGKFXVDGRLITVLYNGRTKTTQLGGSDATAIASRLLSELLPEK

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