NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TM7x89Draft_c00201

Scaffold TM7x89Draft_c00201


Overview

Basic Information
Taxon OID2236661024 Open in IMG/M
Scaffold IDTM7x89Draft_c00201 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48863
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (54.35%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral → Human Oral Microbial Communities From Stanford University, California, Usa (12)

Source Dataset Sampling Location
Location NameOak Ridge TN
CoordinatesLat. (o)35.92634Long. (o)-84.31646Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103433Metagenome101N

Sequences

Protein IDFamilyRBSSequence
TM7x89Draft_0020145F103433N/AMIFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWSGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARAIAGLSPDDASKIPAYIKRASIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYXXPFLWSMNFSVIGAFXWLALMPGXAXPXAHINGIIFYIPLLLFVYILIGLWADYVVKRTVKYE
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