Scaffold none_p0074260

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold none_p0074260

Scaffold none_p0074260

Overview

Basic Information
Taxon OID	2236876004 Open in IMG/M
Scaffold ID	none_p0074260 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p1-ETM-15m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of South Carolina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	540
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Columbia River estuary, South channel near Astoria
Coordinates	Lat. (^o)	46.249	Long. (^o)	-123.986	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021984	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
none_00742601	F021984	N/A	YTIPRGYTITPKVKYLRTKEGKKRTNLVELTNKRRGIAKLFGNEEYAIKYIQSLESNKVTANALAGKGAPSIGKHAILVASKDLDAAKELSGNFDDLTADEIKSLNL

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