NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold none_p075260

Scaffold none_p075260


Overview

Basic Information
Taxon OID2236876005 Open in IMG/M
Scaffold IDnone_p075260 Open in IMG/M
Source Dataset NameEstuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-3LG-ETM-15m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameColumbia River estuary, South channel near Astoria
CoordinatesLat. (o)46.249Long. (o)-123.986Alt. (m)Depth (m)15
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037203Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
none_0752601F037203N/ALDAENIAHMWDCSPINYNETRTLTYNDGSRYGHYISIYRDERGLYERPIHYSRN
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