NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold none_p0003522

Scaffold none_p0003522


Overview

Basic Information
Taxon OID2236876007 Open in IMG/M
Scaffold IDnone_p0003522 Open in IMG/M
Source Dataset NameMarine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p1-Deep1200
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameCape Meares
CoordinatesLat. (o)45.483Long. (o)-124.918Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072431Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
none_00035221F072431N/AFMEAPGRPKIGEHEYKRLKLSWSSLRKHNTDIEIRFCYSERINLFRDPESILGKDRNDSLYDKWASLCNDYGVEMYPFHESFIGNEPNAWCIHRWYNLCLWEKENLNILYLDADTYINGDIQLIFDLYKRDPVYGREELGFRHDPNLGVSGEDPRFYLDLVDASIVAQGGKTE
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