NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PC6_p0241396

Scaffold PC6_p0241396


Overview

Basic Information
Taxon OID2236876023 Open in IMG/M
Scaffold IDPC6_p0241396 Open in IMG/M
Source Dataset NameSaline water concentrator pond microbial communities from Bras del Port saltern, Spain - PC6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water Concentrator Pond → Saline Water Concentrator Pond Microbial Communities From Bras Del Port Saltern, Santa Pola, Spain

Source Dataset Sampling Location
Location NamePunta Cormorant, Spain
CoordinatesLat. (o)38.11Long. (o)-0.36Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008031Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
PC6_02413963F008031AGGAGGMATYKSEAGAILQPGNQINRLSSFNTEGVYGWPGIEAYELIGYAKVENLAADKASYKSFDLIIPSPDRRPDDRVRDNRTSMVVQASAARPAYVYGASIAIGHDIPAGGEPAFPASPVTADLGGTTGEFILFGPDNSGHLSVCLLLRPTVWL
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