Scaffold PC6_p0686630

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold PC6_p0686630

Scaffold PC6_p0686630

Overview

Basic Information
Taxon OID	2236876023 Open in IMG/M
Scaffold ID	PC6_p0686630 Open in IMG/M
Source Dataset Name	Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - PC6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	GATC-Biotech AG, Konstanz, Germany
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	965
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water Concentrator Pond → Saline Water Concentrator Pond Microbial Communities From Bras Del Port Saltern, Santa Pola, Spain

Source Dataset Sampling Location
Location Name	Punta Cormorant, Spain
Coordinates	Lat. (^o)	38.11	Long. (^o)	-0.36	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029237	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
PC6_06866302	F029237	AGGAGG	MTVPNFGDIVETNFIYSTEQREKRKFGDSDVQVSGNPAVYHAGDVVHLPYSSGERSTIEAIGLAWAAFASGVLPSGL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.