NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_c0027949

Scaffold Draft_c0027949


Overview

Basic Information
Taxon OID3300000032 Open in IMG/M
Scaffold IDDraft_c0027949 Open in IMG/M
Source Dataset NameOil sands microbial community from Northern Alberta which degrade Naphthaline
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6771
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameSyncrude tailings pond, Wood Buffalo, Alberta, Canada
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024821Metagenome / Metatranscriptome204Y
F056712Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Draft_00279493F056712N/AVRVVRRFKDGMAVLVGLLENIEKGLVRRLMKGSQKQPWLIVFLIVFLSMNKKDNNKKKDEQEKDENYWRVLGGL*
Draft_00279496F024821N/AMHPMEGSTREKFIHTLMQYKEKFGQEKASAIQEKFWQSREQIVADSASEIDWFPSWKKNQILEDLLAKTYLDLIAEMEREGHS*

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