Scaffold Draft_c0055601

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Draft_c0055601

Scaffold Draft_c0055601

Overview

Basic Information
Taxon OID	3300000032 Open in IMG/M
Scaffold ID	Draft_c0055601 Open in IMG/M
Source Dataset Name	Oil sands microbial community from Northern Alberta which degrade Naphthaline
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9123
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Syncrude tailings pond, Wood Buffalo, Alberta, Canada
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.55	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020198	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_00556012	F020198	AGGAG	MLTIPHKKLKSREATMTFLLDPARLKTFILDLRAYLRNTQHLFQKKGFENDPRQCVHRKMYDRPETVLFRRLNHFCYERGLDWEGAREMMENMLSERFMCECEMVWRLSDEQVEERLAGRR*

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