NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICChiseqgaiiDRAFT_c0666043

Scaffold ICChiseqgaiiDRAFT_c0666043


Overview

Basic Information
Taxon OID3300000033 Open in IMG/M
Scaffold IDICChiseqgaiiDRAFT_c0666043 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)654
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007784Metagenome / Metatranscriptome345Y
F034672Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
ICChiseqgaiiDRAFT_06660431F007784N/AVKKLLLAGIAASMVYTIAARAADDDPPPPPSRFRPWQQVWQYNDIRVTVTARDPFSIEYDLGGTIWGGGHFTVIKGALYFNERPCLPLQPVGY*
ICChiseqgaiiDRAFT_06660432F034672AGGMKKRFLTGIAALLLSTGAAHATERLPEAMLGNWCWIEGGDEQNWNQQIFARVPPEGCHGGDSLIRIDQKGIEGEGSCTFGKIEQTGPNAFLIYTYCDDDTNGSTTFEIIDGKLVITAL
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