NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICChiseqgaiiDRAFT_c2111977

Scaffold ICChiseqgaiiDRAFT_c2111977


Overview

Basic Information
Taxon OID3300000033 Open in IMG/M
Scaffold IDICChiseqgaiiDRAFT_c2111977 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1228
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007536Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
ICChiseqgaiiDRAFT_21119772F007536N/ARIYASTQWARPHPALSPRRGARVEERTCSVNMRLAMDMLNLHLRLIQSALGQKAGAKPMGLPHRESSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASFTTGRDTAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSXTKGXXHASETGTAFPRPRLKGCQQRQSRGARLRLAGGACSERQNLRVPLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR*
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