NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ARcpr5oldR_c000186

Scaffold ARcpr5oldR_c000186


Overview

Basic Information
Taxon OID3300000041 Open in IMG/M
Scaffold IDARcpr5oldR_c000186 Open in IMG/M
Source Dataset NameArabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)10850
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUSA: Bethesda, Maryland
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023635Metagenome / Metatranscriptome209N
F080116Metagenome115N

Sequences

Protein IDFamilyRBSSequence
ARcpr5oldR_00018614F023635GGAGMLMTNSGQVTILGLLILITFVNVGLIAYPFAWQGEATTALNNSKASSIDGNRTVTPHGANISATLPLLVLFPEASQISPTGFSTKADGRLQIEVLFSKPVDTSTFIPGTSLILAMETNPNATVTVKWDLNNRFLTIVTNDLLSSLCHFDPDCNFALRLDGTAPNSIKATDGSLLNGGFDNYWRGFIIIG*
ARcpr5oldR_0001865F080116N/AMMINEENEYNKISDSLSEIKSLVDKMYVPTRTIEDAIHKREMGAYRGGNYKKFVDFNINFTSNYYDSITAIVDKLVEITNNKIHSEKDSQVLYLKIIDILRMIIYQKGHRGFIGELDEAAKKFKKSKSSPFINILDIDINLIDDTVSVIENFKKQFLN*
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