Scaffold ARSoilYngRDRAFT_c01116

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold ARSoilYngRDRAFT_c01116

Scaffold ARSoilYngRDRAFT_c01116

Overview

Basic Information
Taxon OID	3300000042 Open in IMG/M
Scaffold ID	ARSoilYngRDRAFT_c01116 Open in IMG/M
Source Dataset Name	Arabidopsis rhizosphere soil microbial communities from the University of North Carolina - sample from Arabidopsis soil young
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1686
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location Name	USA: Bethesda, Maryland
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069815	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
ARSoilYngRDRAFT_011162	F069815	N/A	MTRYKGRTRTSQRDFPHRVEMIVPKGGFGKRLDEMHEWHRARSIKPRFGRGRRDANNRDYVTWCFADAAMADSFRASFIGCYA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.