Scaffold ARSoilOldRDRAFT_c000180

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ARSoilOldRDRAFT_c000180

Scaffold ARSoilOldRDRAFT_c000180

Overview

Basic Information
Taxon OID	3300000044 Open in IMG/M
Scaffold ID	ARSoilOldRDRAFT_c000180 Open in IMG/M
Source Dataset Name	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	10318
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9	Long. (^o)	-79.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015505	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
ARSoilOldRDRAFT_00018010	F015505	GGAG	MGTINDQAREVSSGTYFAHLFKLDADQYQLLSQKPRFHRDCEYLNRPYEXSDLMRQATDAGVWPR*

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