Scaffold WSSedB1B2DRAFT_c001371

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold WSSedB1B2DRAFT_c001371

Scaffold WSSedB1B2DRAFT_c001371

Overview

Basic Information
Taxon OID	3300000077 Open in IMG/M
Scaffold ID	WSSedB1B2DRAFT_c001371 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2536
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location Name	Twitchell Island in the Sacramento/San Joaquin Delta, CA
Coordinates	Lat. (^o)	38.10726	Long. (^o)	-121.648538	Alt. (m)		Depth (m)	0 to .12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067458	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
WSSedB1B2DRAFT_0013712	F067458	AGGTGG	MKRLVFAGLIFLVLLQGIWFAAADDSPDYAKIVVVHLTINKSSITEKSVEMRYGHPPNIEARNGDFKGTLKTADGSTIREFNLWDPRYQLGDVLEKDNESSGYLSGYXTYSDXADLVLILPYYENQMTFELYDKKTGTLLKKVNMSQAITKFQSNYPKDPGSISVSPIQFDKSVLYVITGVVISILIIGMILSMVRKK*

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