NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold WSSedB1B2DRAFT_c002933

Scaffold WSSedB1B2DRAFT_c002933


Overview

Basic Information
Taxon OID3300000077 Open in IMG/M
Scaffold IDWSSedB1B2DRAFT_c002933 Open in IMG/M
Source Dataset NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1628
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location NameTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.10726Long. (o)-121.648538Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064689Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
WSSedB1B2DRAFT_0029332F064689AGGAVNCQKCDSIIVCPEGLTGEKICNKCGLVVEDSPAFKSFTQWVPEWYSNWKEEDSETLKEWLTTLRSVTCQLNIPNYPYREEAARTIRKQNHILFRSQKLSKNKRATVAALMHLVLKEYNKLRPLKEISKELSLDPKSVLKQVWILNKTLKQEENEPLKIQRRTAIDYLNEYAREITQNKELILCAKNTLIKIKRSGGNPIGLAAGAFYFSCREKKIQISKEKIGQAFHIPPRTIYTNEARIRKLLATPSPNYISILTTNQYNLKKISVDQ*
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