NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LCrCPGB2aDRAFT_c001558

Scaffold LCrCPGB2aDRAFT_c001558


Overview

Basic Information
Taxon OID3300000095 Open in IMG/M
Scaffold IDLCrCPGB2aDRAFT_c001558 Open in IMG/M
Source Dataset NameSoil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3774
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006886Metagenome / Metatranscriptome362Y
F058553Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
LCrCPGB2aDRAFT_0015584F058553AGGAGMAQTRAVMPSKFVPLADELLAATGASDYSTLIGILLSRYGKHLLNTWEIANCPQAASVQPPIAPVSIAQPETFTPMEF*
LCrCPGB2aDRAFT_0015587F006886N/AMARYFFMYSEFDASEFDYLNSATPQQFEPQQQTKTPEVTNIERFWNLTGNWGEFGSYFGAGLSASLIVRAIPALIPAAVILIPAAGLGLAVFTLSSEGTAKLRSQLILIAVATALIAGNWDAWQAWIIANSQLLIFGFVVTVITVAFVATQIWSKLNVSK*
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